public class CoordinateSortingChecker extends Object implements VariantContextProcessor
put(htsjdk.variant.variantcontext.VariantContext)
throws a VariantContextFilterException
.Constructor and Description |
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CoordinateSortingChecker(VariantContextProcessor sink)
Initialize the checker
|
Modifier and Type | Method and Description |
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void |
close()
Mark processing as done, no more variants will come in.
|
void |
put(htsjdk.variant.variantcontext.VariantContext vc)
Put a Variant Context into the filter.
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public CoordinateSortingChecker(VariantContextProcessor sink)
public void put(htsjdk.variant.variantcontext.VariantContext vc) throws VariantContextFilterException
VariantContextProcessor
put
in interface VariantContextProcessor
vc
- VariantContext
to put into the filter.VariantContextFilterException
- on problems during the filtrationpublic void close()
VariantContextProcessor
close
in interface VariantContextProcessor
close
in interface Closeable
close
in interface AutoCloseable
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