Deprecated API

Contents

• Deprecated Classes
• Deprecated Methods
• Deprecated Constructors

Deprecated Classes

Class and Description
de.charite.compbio.jannovar.annotation.AllAnnotationListTextGenerator
de.charite.compbio.jannovar.annotation.AnnotationTextGenerator
de.charite.compbio.jannovar.annotation.BestAnnotationListTextGenerator
de.charite.compbio.jannovar.pedigree.GenotypeList
de.charite.compbio.jannovar.pedigree.GenotypeListBuilder

Deprecated Methods

Method and Description
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.add(int, NucleotideChange)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.add(int, ProteinChange)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.add(NucleotideChange)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.add(ProteinChange)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.addAll(Collection<? extends NucleotideChange>)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.addAll(Collection<? extends ProteinChange>)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.addAll(int, Collection<? extends NucleotideChange>)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.addAll(int, Collection<? extends ProteinChange>)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.clear()
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.clear()
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.remove(int)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.remove(int)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.remove(Object)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.remove(Object)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.removeAll(Collection<?>)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.removeAll(Collection<?>)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.retainAll(Collection<?>)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.retainAll(Collection<?>)
de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele.set(int, NucleotideChange)
de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele.set(int, ProteinChange)

Deprecated Constructors

Constructor and Description
de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation(int)