de.charite.compbio.jannovar.vardbs.uk10k

Class UK10KRecordBuilder

java.lang.Object

de.charite.compbio.jannovar.vardbs.uk10k.UK10KRecordBuilder

public class UK10KRecordBuilder
extends Object

Constructor Summary

Constructors

Constructor and Description
UK10KRecordBuilder()

Method Summary

Modifier and Type	Method and Description
UK10KRecord	build()
ArrayList<Integer>	getAlleleCounts()
ArrayList<Double>	getAlleleFrequencies()
ArrayList<String>	getAlt()
int	getChromCount()
String	getContig()
ArrayList<String>	getFilter()
String	getID()
int	getPos()
String	getRef()
void	setAlleleCounts(ArrayList<Integer> alleleCounts)
void	setAlleleFrequencies(ArrayList<Double> alleleFrequencies)
void	setAlt(ArrayList<String> alt)
void	setChromCount(int chromCount)
void	setContig(String contig)
void	setFilter(ArrayList<String> filter)
void	setID(String id)
void	setPos(int pos)
void	setRef(String ref)
String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

UK10KRecordBuilder

public UK10KRecordBuilder()

Method Detail

build

public UK10KRecord build()

getContig

public String getContig()

setContig

public void setContig(String contig)

getPos

public int getPos()

setPos

public void setPos(int pos)

getID

public String getID()

setID

public void setID(String id)

getRef

public String getRef()

setRef

public void setRef(String ref)

getAlt

public ArrayList<String> getAlt()

setAlt

public void setAlt(ArrayList<String> alt)

getFilter

public ArrayList<String> getFilter()

setFilter

public void setFilter(ArrayList<String> filter)

getAlleleCounts

public ArrayList<Integer> getAlleleCounts()

setAlleleCounts

public void setAlleleCounts(ArrayList<Integer> alleleCounts)

getChromCount

public int getChromCount()

setChromCount

public void setChromCount(int chromCount)

getAlleleFrequencies

public ArrayList<Double> getAlleleFrequencies()

setAlleleFrequencies

public void setAlleleFrequencies(ArrayList<Double> alleleFrequencies)

toString

public String toString()

Overrides:

toString in class Object