public class DBSNPRecordBuilder extends Object
DBSNPRecord
classpublic DBSNPRecord build()
public String getChrom()
public void setContig(String chrom)
public int getPos()
public void setPos(int pos)
public String getId()
public void setID(String id)
public String getRef()
public void setRef(String ref)
public int getRSID()
public void setRSID(int rsID)
public int getRSPos()
public void setRSPos(int rsPos)
public boolean isReversed()
public void setReversed(boolean reversed)
public DBSNPVariantProperty getVariantProperty()
public void setVariantProperty(DBSNPVariantProperty variantProperty)
public ArrayList<DBSNPGeneInfo> getGeneInfos()
public void setGeneInfos(ArrayList<DBSNPGeneInfo> geneInfos)
public int getDbSNPBuildID()
public void setDbSNPBuildID(int dbSNPBuildID)
public DBSNPVariantAlleleOrigin getVariantAlleleOrigin()
public void setVariantAlleleOrigin(DBSNPVariantAlleleOrigin variantAlleleOrigin)
public HashSet<DBSNPVariantSuspectReasonCode> getVariantSuspectReasonCode()
public void setVariantSuspectReasonCode(HashSet<DBSNPVariantSuspectReasonCode> variantSuspectReasonCode)
public int getWeights()
public void setWeights(int weights)
public String getVariationClass()
public void setVariationClass(String variationClass)
public boolean isPrecious()
public void setPrecious(boolean precious)
public boolean isThirdPartyAnnotation()
public void setThirdPartyAnnotation(boolean thirdPartyAnnotation)
public boolean isPubMedCentral()
public void setPubMedCentral(boolean pubMedCentral)
public boolean isThreeDStructure()
public void setThreeDStructure(boolean threeDStructure)
public boolean isSubmitterLinkOut()
public void setSubmitterLinkOut(boolean submitterLinkOut)
public boolean isNonSynonymousFrameShift()
public void setNonSynonymousFrameShift(boolean nonSynonymousFrameShift)
public boolean isNonSynonymousMissense()
public void setNonSynonymousMissense(boolean nonSynonymousMissense)
public boolean isNonSynonymousNonsense()
public void setNonSynonymousNonsense(boolean nonSynonymousNonsense)
public boolean isReference()
public void setReference(boolean reference)
public boolean isSynonymous()
public void setSynonymous(boolean synonymous)
public boolean isInThreePrimeUTR()
public void setInThreePrimeUTR(boolean inThreePrimeUTR)
public boolean isInFivePrimeUTR()
public void setInFivePrimeUTR(boolean inFivePrimeUTR)
public boolean isInAcceptor()
public void setInAcceptor(boolean inAcceptor)
public boolean isInDonor()
public void setInDonor(boolean inDonor)
public boolean isInIntron()
public void setInIntron(boolean inIntron)
public boolean isInThreePrime()
public void setInThreePrime(boolean inThreePrime)
public boolean isInFivePrime()
public void setInFivePrime(boolean inFivePrime)
public boolean isOtherVariant()
public void setOtherVariant(boolean otherVariant)
public boolean isAssemblyConflict()
public void setAssemblyConflict(boolean assemblyConflict)
public boolean isAssemblySpecific()
public void setAssemblySpecific(boolean assemblySpecific)
public boolean isMutation()
public void setMutation(boolean mutation)
public boolean isValidated()
public void setValidated(boolean validated)
public boolean isFivePercentAll()
public void setFivePercentAll(boolean fivePercentAll)
public boolean isFivePercentOne()
public void setFivePercentOne(boolean fivePercentOne)
public boolean isHighDensityGenotyping()
public void setHighDensityGenotyping(boolean highDensityGenotyping)
public boolean isGenotypesAvailable()
public void setGenotypesAvailable(boolean genotypesAvailable)
public boolean isG1kPhase1()
public void setG1kPhase1(boolean g1kPhase1)
public boolean isG1kPhase3()
public void setG1kPhase3(boolean g1kPhase3)
public boolean isClinicalDiagnosticAssay()
public void setClinicalDiagnosticAssay(boolean clinicalDiagnosticAssay)
public boolean isLocusSpecificDatabase()
public void setLocusSpecificDatabase(boolean locusSpecificDatabase)
public boolean isMicroattributionThirdParty()
public void setMicroattributionThirdParty(boolean microattributionThirdParty)
public boolean isHasOMIMOrOMIA()
public void setHasOMIMOrOMIA(boolean hasOMIMOrOMIA)
public boolean isContigAlelleNotVariant()
public void setContigAlelleNotVariant(boolean contigAlelleNotVariant)
public boolean isWithdrawn()
public void setWithdrawn(boolean withdrawn)
public boolean isNonOverlappingAlleleSet()
public void setNonOverlappingAlleleSet(boolean nonOverlappingAlleleSet)
public boolean isCommon()
public void setCommon(boolean common)
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