de.charite.compbio.jannovar.vardbs.base

Class GenotypeMatch

java.lang.Object

de.charite.compbio.jannovar.vardbs.base.GenotypeMatch

public final class GenotypeMatch
extends Object

A class for annotating the match between an observed genotype and a database genotype

Author:

Manuel Holtgrewe

Constructor Summary

Constructors

Constructor and Description
GenotypeMatch(int observedAllele, int dbAllele, htsjdk.variant.variantcontext.VariantContext obsVC, htsjdk.variant.variantcontext.VariantContext dbVC)

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
int	getDbAllele()
htsjdk.variant.variantcontext.VariantContext	getDBVC()
int	getObservedAllele()
htsjdk.variant.variantcontext.VariantContext	getObsVC()
int	hashCode()
String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

GenotypeMatch

public GenotypeMatch(int observedAllele,
                     int dbAllele,
                     htsjdk.variant.variantcontext.VariantContext obsVC,
                     htsjdk.variant.variantcontext.VariantContext dbVC)

Method Detail

getObservedAllele

public int getObservedAllele()

getDbAllele

public int getDbAllele()

getObsVC

public htsjdk.variant.variantcontext.VariantContext getObsVC()

getDBVC

public htsjdk.variant.variantcontext.VariantContext getDBVC()

toString

public String toString()

Overrides:

toString in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object