de.charite.compbio.jannovar.reference

Class TranscriptIntervalEndExtractor

java.lang.Object

de.charite.compbio.jannovar.reference.TranscriptIntervalEndExtractor

All Implemented Interfaces:

IntervalEndExtractor<TranscriptModel>

public class TranscriptIntervalEndExtractor
extends Object
implements IntervalEndExtractor<TranscriptModel>

Extraction of interval end points for TranscriptModel.

Author:

Manuel Holtgrewe

Constructor Summary

Constructors

Constructor and Description
TranscriptIntervalEndExtractor()

Method Summary

Modifier and Type	Method and Description
int	getBegin(TranscriptModel transcript)
int	getEnd(TranscriptModel transcript)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TranscriptIntervalEndExtractor

public TranscriptIntervalEndExtractor()

Method Detail

getBegin

public int getBegin(TranscriptModel transcript)

Specified by:

getBegin in interface IntervalEndExtractor<TranscriptModel>

Returns:

begin position of x (inclusive)

getEnd

public int getEnd(TranscriptModel transcript)

Specified by:

getEnd in interface IntervalEndExtractor<TranscriptModel>

Returns:

begin position of x (exclusive)