de.charite.compbio.jannovar.reference

Class NucleotidePointLocationBuilder

java.lang.Object

de.charite.compbio.jannovar.reference.NucleotidePointLocationBuilder

public final class NucleotidePointLocationBuilder
extends Object

Helper class that allows easy building of NucleotidePointLocations.

Author:

Manuel Holtgrewe

Constructor Summary

Constructors

Constructor and Description
NucleotidePointLocationBuilder(TranscriptModel transcript) Construct the position builder with the given transcript

Method Summary

Modifier and Type	Method and Description
NucleotidePointLocation	getNucleotidePointLocation(GenomePosition pos)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NucleotidePointLocationBuilder

public NucleotidePointLocationBuilder(TranscriptModel transcript)

Construct the position builder with the given transcript

Method Detail

getNucleotidePointLocation

public NucleotidePointLocation getNucleotidePointLocation(GenomePosition pos)

Parameters:

pos - GenomePosition with to translate into NucleotidePointLocation

Returns:

NucleotidePointLocation, given the transcript in transcript.