public final class CDSPosition extends Object
Constructor and Description |
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CDSPosition(TranscriptModel transcript,
int pos)
construct transcript position with one-based coordinate system
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CDSPosition(TranscriptModel transcript,
int pos,
PositionType positionType)
construct transcript position with selected coordinate system
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Modifier and Type | Method and Description |
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boolean |
equals(Object obj) |
int |
getFrameshift() |
int |
getPos() |
TranscriptModel |
getTranscript() |
int |
hashCode() |
CDSPosition |
shifted(int delta)
Return shifted CDSPosition.
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String |
toString() |
public CDSPosition(TranscriptModel transcript, int pos)
public CDSPosition(TranscriptModel transcript, int pos, PositionType positionType)
public TranscriptModel getTranscript()
public int getPos()
public CDSPosition shifted(int delta)
delta
- the value to add to the positionpublic int getFrameshift()
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