public class MendelianCheckerAD extends AbstractMendelianChecker
Genotype
that is shared by all affected
individuals but no unaffected individuals in the pedigree. We do not allow homozygous alternative for any affected
individuals (and also for the one person in these of singleton pedigrees since this is not the interesting case for
users of this class.Constructor and Description |
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MendelianCheckerAD(MendelianInheritanceChecker parent) |
Modifier and Type | Method and Description |
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com.google.common.collect.ImmutableList<GenotypeCalls> |
filterCompatibleRecords(Collection<GenotypeCalls> calls)
Filter list of
GenotypeCalls for fitting to mode |
public MendelianCheckerAD(MendelianInheritanceChecker parent)
public com.google.common.collect.ImmutableList<GenotypeCalls> filterCompatibleRecords(Collection<GenotypeCalls> calls)
AbstractMendelianChecker
GenotypeCalls
for fitting to modefilterCompatibleRecords
in class AbstractMendelianChecker
calls
- The list of calls to check for compatibilityImmutableList
of GenotypeCalls
objects, subset of calls
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