public class VariantContextCounter extends Object
VariantContext
with an integer counter and set of compatible modesConstructor and Description |
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VariantContextCounter(htsjdk.variant.variantcontext.VariantContext variantContext) |
VariantContextCounter(htsjdk.variant.variantcontext.VariantContext variantContext,
int counter) |
Modifier and Type | Method and Description |
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void |
addCompatibleMode(ModeOfInheritance mode) |
int |
decrement() |
boolean |
equals(Object obj) |
TreeSet<ModeOfInheritance> |
getCompatibleModes() |
int |
getCounter() |
htsjdk.variant.variantcontext.VariantContext |
getVariantContext() |
int |
hashCode() |
int |
increment() |
void |
setCompatibleModes(TreeSet<ModeOfInheritance> compatibleModes) |
void |
setCounter(int counter) |
void |
setVariantContext(htsjdk.variant.variantcontext.VariantContext variantContext) |
String |
toString() |
public VariantContextCounter(htsjdk.variant.variantcontext.VariantContext variantContext)
public VariantContextCounter(htsjdk.variant.variantcontext.VariantContext variantContext, int counter)
public int increment()
public int decrement()
public htsjdk.variant.variantcontext.VariantContext getVariantContext()
public void setVariantContext(htsjdk.variant.variantcontext.VariantContext variantContext)
public int getCounter()
public void setCounter(int counter)
public void addCompatibleMode(ModeOfInheritance mode)
public TreeSet<ModeOfInheritance> getCompatibleModes()
public void setCompatibleModes(TreeSet<ModeOfInheritance> compatibleModes)
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