Package de.charite.compbio.jannovar.impl.parse

Interface Summary

Interface	Description
TranscriptParser	General interface for transcript parsers.

Class Summary

Class	Description
FASTAParser	Generic FASTA parser that allow record-wise loading of FASTA files
FASTARecord	Representation of a FASTA record
ReferenceDictParser	Allows loading of ReferenceDictParser from UCSC and RefSeq data.
TranscriptSupportLevelsSetterFromLengths	Set the transcript support level from transcript lengths.

Exception Summary

Exception	Description
InvalidAttributeException	InvalidAttributeException are thrown if a attribute given to a method is invalid and can not be processed.
TranscriptParseException	Exception that occurs during parsing of transcript database files.