de.charite.compbio.jannovar.impl.intervals

Class Interval<T>

java.lang.Object

de.charite.compbio.jannovar.impl.intervals.Interval<T>

All Implemented Interfaces:

Serializable, Comparable<Interval<T>>

public class Interval<T>
extends Object
implements Serializable, Comparable<Interval<T>>

Half-open interval for serialization of an IntervalArray.

Author:

Manuel Holtgrewe

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Interval(int begin, int end, T value, int maxEnd)
Interval(MutableInterval<T> other)

Method Summary

Modifier and Type	Method and Description
boolean	allLeftOf(int point)
int	compareTo(Interval<T> o)
boolean	contains(int point)
boolean	equals(Object obj)
int	getBegin()
int	getEnd()
int	getMaxEnd()
T	getValue()
int	hashCode()
boolean	isLeftOf(int point)
boolean	isRightOf(int point)
boolean	overlapsWith(int begin, int end)
String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Interval

public Interval(MutableInterval<T> other)

Interval

public Interval(int begin,
                int end,
                T value,
                int maxEnd)

Method Detail

getBegin

public int getBegin()

Returns:

start point of the interval (inclusive)

getEnd

public int getEnd()

Returns:

end point of the interval (exclusive)

getValue

public T getValue()

Returns:

the value stored for the Interval

getMaxEnd

public int getMaxEnd()

Returns:

the maximum of this nodes end and both of it children's end

allLeftOf

public boolean allLeftOf(int point)

Returns:

true if point is right of maxEnd.

isLeftOf

public boolean isLeftOf(int point)

Returns:

true if point is right of this interval.

isRightOf

public boolean isRightOf(int point)

Returns:

true if point is left of this interval.

contains

public boolean contains(int point)

Returns:

true if this intervals contains the given point.

overlapsWith

public boolean overlapsWith(int begin,
                            int end)

Returns:

true if this interval overlaps with [begin, end).

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

compareTo

public int compareTo(Interval<T> o)

Specified by:

compareTo in interface Comparable<Interval<T>>

toString

public String toString()

Overrides:

toString in class Object