public static class VariantContextAnnotator.Options extends Object
VariantContextAnnotator
Constructor and Description |
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Options()
Constructor
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Options(InfoFields infoFields,
boolean oneAnnotationOnly,
boolean escapeAnnField,
boolean nt3PrimeShifting)
constructor using fields
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Modifier and Type | Method and Description |
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InfoFields |
getInfoFields()
Getter for info fields
|
boolean |
isEscapeAnnField() |
boolean |
isNt3PrimeShifting() |
boolean |
isOneAnnotationOnly() |
public Options()
public Options(InfoFields infoFields, boolean oneAnnotationOnly, boolean escapeAnnField, boolean nt3PrimeShifting)
infoFields
- selection of info fields to write out (defaults to InfoFields.VCF_ANN
)oneAnnotationOnly
- Whether or not to trim each annotation list to the first (one with highest putative impact),
defaults to true
escapeAnnField
- whether or not to escape values in the ANN field (defaults to true
)nt3PrimeShifting
- whether or not to perform shifting towards the 3' end of the transcript (defaults to
true
)public InfoFields getInfoFields()
public boolean isOneAnnotationOnly()
public boolean isEscapeAnnField()
public boolean isNt3PrimeShifting()
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