public class GenomeRegionSequenceExtractor extends Object
GenomeInterval
from a IndexedFastaSequenceFile
.Constructor and Description |
---|
GenomeRegionSequenceExtractor(htsjdk.samtools.reference.IndexedFastaSequenceFile indexedFile) |
Modifier and Type | Method and Description |
---|---|
String |
load(GenomeInterval region)
Load sequence from the given
region from indexedFile |
public GenomeRegionSequenceExtractor(htsjdk.samtools.reference.IndexedFastaSequenceFile indexedFile)
public String load(GenomeInterval region)
region
from indexedFile
region
- GenomeInterval
to load sequence forindexedFile
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