public class ProteinDeletion extends ProteinChange
Constructor and Description |
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ProteinDeletion(boolean onlyPredicted,
ProteinRange range)
Construct ProteinDeletion without length and sequence information
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ProteinDeletion(boolean onlyPredicted,
ProteinRange range,
int length)
Construct ProteinDeletion with length information
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ProteinDeletion(boolean onlyPredicted,
ProteinRange range,
String seq)
Construct ProteinDeletion with sequence information
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Modifier and Type | Method and Description |
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static ProteinDeletion |
buildWithLength(boolean onlyPredicted,
String firstAA,
int firstPos,
String lastAA,
int lastPos,
int length)
Construct ProteinDeletion with length information
|
static ProteinDeletion |
buildWithoutSeqDescription(boolean onlyPredicted,
String firstAA,
int firstPos,
String lastAA,
int lastPos)
Construct ProteinDeletion without length and sequence information
|
static ProteinDeletion |
buildWithSequence(boolean onlyPredicted,
String firstAA,
int firstPos,
String lastAA,
int lastPos,
String seq)
Construct ProteinDeletion with sequence
|
ProteinRange |
getRange() |
ProteinSeqDescription |
getSeqDesc() |
String |
toHGVSString(AminoAcidCode code)
Return HGVS representation using the given amino acid code.
|
ProteinChange |
withOnlyPredicted(boolean onlyPredicted) |
equals, hashCode, isOnlyPredicted, toHGVSString
public ProteinDeletion(boolean onlyPredicted, ProteinRange range)
public ProteinDeletion(boolean onlyPredicted, ProteinRange range, int length)
public ProteinDeletion(boolean onlyPredicted, ProteinRange range, String seq)
public static ProteinDeletion buildWithoutSeqDescription(boolean onlyPredicted, String firstAA, int firstPos, String lastAA, int lastPos)
public static ProteinDeletion buildWithLength(boolean onlyPredicted, String firstAA, int firstPos, String lastAA, int lastPos, int length)
public static ProteinDeletion buildWithSequence(boolean onlyPredicted, String firstAA, int firstPos, String lastAA, int lastPos, String seq)
public ProteinRange getRange()
public ProteinSeqDescription getSeqDesc()
public String toHGVSString(AminoAcidCode code)
ConvertibleToHGVSString
code
- AminoAcidCode
to useProteinPointLocation
public ProteinChange withOnlyPredicted(boolean onlyPredicted)
withOnlyPredicted
in class ProteinChange
ProteinChange
object with prediction state set to the one given by the parameterCopyright © 2016. All rights reserved.