de.charite.compbio.jannovar.hgvs.parser

Class HGVSParser

java.lang.Object

de.charite.compbio.jannovar.hgvs.parser.HGVSParser

public class HGVSParser
extends Object

Driver code for parsing HGVS strings into HGVSVariant objects.

Author:

Manuel Holtgrewe

Constructor Summary

Constructors

Constructor and Description
HGVSParser()
HGVSParser(boolean debug)

Method Summary

Modifier and Type	Method and Description
HGVSVariant	parseHGVSString(String inputString) Parse HGVS change string

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HGVSParser

public HGVSParser()

HGVSParser

public HGVSParser(boolean debug)

Method Detail

parseHGVSString

public HGVSVariant parseHGVSString(String inputString)

Parse HGVS change string

Parameters:

inputString - with the legacy mutation to parse

Returns:

LegacyVariant representing inputString

Throws:

HGVSParsingException - if the parsing failed (note that this is an unchecked Exception)