public class NucleotideInversion extends NucleotideChange
Constructor and Description |
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NucleotideInversion(boolean onlyPredicted,
NucleotideRange range,
NucleotideSeqDescription seq) |
Modifier and Type | Method and Description |
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static NucleotideInversion |
build(boolean onlyPredicted,
int firstPos,
int lastPos,
NucleotideSeqDescription seq) |
static NucleotideInversion |
buildWithLength(boolean onlyPredicted,
int firstPos,
int lastPos,
int seqLen) |
static NucleotideInversion |
buildWithOffset(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset,
NucleotideSeqDescription seq) |
static NucleotideInversion |
buildWithOffsetWithLength(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset,
int seqLen) |
static NucleotideInversion |
buildWithOffsetWithoutSeqDescription(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset) |
static NucleotideInversion |
buildWithOffsetWithSequence(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset,
String nts) |
static NucleotideInversion |
buildWithoutSeqDescription(boolean onlyPredicted,
int firstPos,
int lastPos) |
static NucleotideInversion |
buildWithSequence(boolean onlyPredicted,
int firstPos,
int lastPos,
String nts) |
boolean |
equals(Object obj) |
NucleotideRange |
getRange() |
NucleotideSeqDescription |
getSeq() |
int |
hashCode() |
String |
toHGVSString()
Return HGVS representation in three-letter amino acid code.
|
String |
toString() |
NucleotideInversion |
withOnlyPredicted(boolean flag) |
isOnlyPredicted, toHGVSString
public NucleotideInversion(boolean onlyPredicted, NucleotideRange range, NucleotideSeqDescription seq)
public static NucleotideInversion buildWithOffset(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, NucleotideSeqDescription seq)
public static NucleotideInversion buildWithOffsetWithSequence(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, String nts)
public static NucleotideInversion buildWithOffsetWithLength(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, int seqLen)
public static NucleotideInversion buildWithOffsetWithoutSeqDescription(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset)
public static NucleotideInversion build(boolean onlyPredicted, int firstPos, int lastPos, NucleotideSeqDescription seq)
public static NucleotideInversion buildWithSequence(boolean onlyPredicted, int firstPos, int lastPos, String nts)
public static NucleotideInversion buildWithLength(boolean onlyPredicted, int firstPos, int lastPos, int seqLen)
public static NucleotideInversion buildWithoutSeqDescription(boolean onlyPredicted, int firstPos, int lastPos)
public NucleotideInversion withOnlyPredicted(boolean flag)
withOnlyPredicted
in class NucleotideChange
NucleotideChange
with given onlyPredicted
value.public NucleotideRange getRange()
public NucleotideSeqDescription getSeq()
public String toHGVSString()
ConvertibleToHGVSString
ProteinPointLocation
public int hashCode()
hashCode
in class NucleotideChange
public boolean equals(Object obj)
equals
in class NucleotideChange
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