public class NucleotideDuplication extends NucleotideChange
Constructor and Description |
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NucleotideDuplication(boolean onlyPredicted,
NucleotideRange range,
NucleotideSeqDescription seq) |
Modifier and Type | Method and Description |
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static NucleotideDuplication |
build(boolean onlyPredicted,
int firstPos,
int lastPos,
NucleotideSeqDescription seq) |
static NucleotideDuplication |
buildWithLength(boolean onlyPredicted,
int firstPos,
int lastPos,
int seqLen) |
static NucleotideDuplication |
buildWithOffset(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset,
NucleotideSeqDescription seq) |
static NucleotideDuplication |
buildWithOffsetWithLength(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset,
int seqLen) |
static NucleotideDuplication |
buildWithOffsetWithoutSeqDescription(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset) |
static NucleotideDuplication |
buildWithOffsetWithSequence(boolean onlyPredicted,
int firstPos,
int firstPosOffset,
int lastPos,
int lastPosOffset,
String nts) |
static NucleotideDuplication |
buildWithoutSeqDescription(boolean onlyPredicted,
int firstPos,
int lastPos) |
static NucleotideDuplication |
buildWithSequence(boolean onlyPredicted,
int firstPos,
int lastPos,
String nts) |
boolean |
equals(Object obj) |
NucleotideRange |
getRange() |
NucleotideSeqDescription |
getSeq() |
int |
hashCode() |
String |
toHGVSString()
Return HGVS representation in three-letter amino acid code.
|
String |
toString() |
NucleotideDuplication |
withOnlyPredicted(boolean flag) |
isOnlyPredicted, toHGVSString
public NucleotideDuplication(boolean onlyPredicted, NucleotideRange range, NucleotideSeqDescription seq)
public static NucleotideDuplication buildWithOffset(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, NucleotideSeqDescription seq)
public static NucleotideDuplication buildWithOffsetWithSequence(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, String nts)
public static NucleotideDuplication buildWithOffsetWithLength(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, int seqLen)
public static NucleotideDuplication buildWithOffsetWithoutSeqDescription(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset)
public static NucleotideDuplication build(boolean onlyPredicted, int firstPos, int lastPos, NucleotideSeqDescription seq)
public static NucleotideDuplication buildWithSequence(boolean onlyPredicted, int firstPos, int lastPos, String nts)
public static NucleotideDuplication buildWithLength(boolean onlyPredicted, int firstPos, int lastPos, int seqLen)
public static NucleotideDuplication buildWithoutSeqDescription(boolean onlyPredicted, int firstPos, int lastPos)
public NucleotideDuplication withOnlyPredicted(boolean flag)
withOnlyPredicted
in class NucleotideChange
NucleotideChange
with given onlyPredicted
value.public NucleotideRange getRange()
public NucleotideSeqDescription getSeq()
public String toHGVSString()
ConvertibleToHGVSString
ProteinPointLocation
public int hashCode()
hashCode
in class NucleotideChange
public boolean equals(Object obj)
equals
in class NucleotideChange
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