public final class JannovarData extends Object implements Serializable
Constructor and Description |
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JannovarData(ReferenceDictionary refDict,
com.google.common.collect.ImmutableList<TranscriptModel> transcriptInfos)
Initialize the object with the given values.
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Modifier and Type | Method and Description |
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com.google.common.collect.ImmutableMap<Integer,Chromosome> |
getChromosomes() |
ReferenceDictionary |
getRefDict() |
com.google.common.collect.ImmutableMap<String,TranscriptModel> |
getTmByAccession() |
com.google.common.collect.ImmutableMultimap<String,TranscriptModel> |
getTmByGeneSymbol() |
public JannovarData(ReferenceDictionary refDict, com.google.common.collect.ImmutableList<TranscriptModel> transcriptInfos)
refDict
- the ReferenceDictionary
to use in this objecttranscriptInfos
- the list of TranscriptModel
objects to use in this objectpublic com.google.common.collect.ImmutableMap<Integer,Chromosome> getChromosomes()
Chromosome
public com.google.common.collect.ImmutableMap<String,TranscriptModel> getTmByAccession()
TranscriptModel
instance.public com.google.common.collect.ImmutableMultimap<String,TranscriptModel> getTmByGeneSymbol()
TranscriptModel
instance.public ReferenceDictionary getRefDict()
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