public abstract class AnnotatedVariantWriter extends Object implements Closeable
Constructor and Description |
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AnnotatedVariantWriter() |
Modifier and Type | Method and Description |
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abstract void |
close()
Close writer, free resources
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abstract String |
getOutFileName()
Returns output path
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abstract void |
put(htsjdk.variant.variantcontext.VariantContext vc)
Write out the given VariantContext with additional annotation.
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public abstract void put(htsjdk.variant.variantcontext.VariantContext vc) throws AnnotationException, IOException
AnnotationException
- when a problem with annotation occursIOException
- when problem with I/O occurspublic abstract String getOutFileName()
public abstract void close()
close
in interface Closeable
close
in interface AutoCloseable
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