public abstract class JannovarAnnotationCommandLineParser extends Object
Constructor and Description |
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JannovarAnnotationCommandLineParser()
Calls initializeParser().
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Modifier and Type | Method and Description |
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abstract JannovarOptions |
parse(String[] argv)
Parse command line arguments and return
JannovarOptions . |
public JannovarAnnotationCommandLineParser()
public abstract JannovarOptions parse(String[] argv) throws org.apache.commons.cli.ParseException, HelpRequestedException
JannovarOptions
.argv
- arguments to parseorg.apache.commons.cli.ParseException
- on problems with the argumentsHelpRequestedException
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