public final class StructuralVariantAnnotationBuilder extends Object
Annotation
objects for SVs.
This is currently not inheriting from AnnotationBuilder
since it uses non of its functionality.Constructor and Description |
---|
StructuralVariantAnnotationBuilder(TranscriptModel transcript,
GenomeVariant change)
Initialize the builder for the structural variant
GenomeVariant in the given TranscriptModel . |
Modifier and Type | Method and Description |
---|---|
Annotation |
build()
Build annotation for
transcript and change |
public StructuralVariantAnnotationBuilder(TranscriptModel transcript, GenomeVariant change)
GenomeVariant
in the given TranscriptModel
.transcript
- TranscriptModel
for the transcript to compute the affection for, use null
for
intergenic variantschange
- GenomeVariant
to compute the annotation for, must describe a structural variant affecting
transcript
public Annotation build()
transcript
and change
Annotation
for the given transcript
and change
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