de.charite.compbio.jannovar.annotation.builders

Class AnnotationBuilderOptions

java.lang.Object

de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderOptions

public class AnnotationBuilderOptions
extends Object

Configuration for the AnnotationBuilder subclasses.

Author:

Manuel Holtgrewe

Constructor Summary

Constructors

Constructor and Description
AnnotationBuilderOptions()
AnnotationBuilderOptions(boolean nt3PrimeShifting)

Method Summary

Modifier and Type	Method and Description
boolean	isNt3PrimeShifting()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationBuilderOptions

public AnnotationBuilderOptions()

AnnotationBuilderOptions

public AnnotationBuilderOptions(boolean nt3PrimeShifting)

Method Detail

isNt3PrimeShifting

public boolean isNt3PrimeShifting()

Returns:

whether or not to shift variants towards the 3' end of the transcript (default is true)