Constant Field Values

Contents

• de.charite.*

de.charite.*

de.charite.compbio.jannovar.JannovarException

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	2L

de.charite.compbio.jannovar.JannovarOptions

Modifier and Type	Constant Field	Value
public static final String	JANNOVAR_VERSION	"0.17"

de.charite.compbio.jannovar.UncheckedJannovarException

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	2L

de.charite.compbio.jannovar.annotation.Annotation

Modifier and Type	Constant Field	Value
public static final String	INFO_EFFECT	"variant effect (UTR5,UTR3,intronic,splicing,missense,stoploss,stopgain,startloss,duplication,frameshift-insertion,frameshift-deletion,non-frameshift-deletion,non-frameshift-insertion,synonymous)"
public static final String	INFO_HGVS	"HGVS Nomenclature"
public static final String	VCF_ANN_DESCRIPTION_STRING	"Functional annotations:\'Allele|Annotation|Annotation_Impact|Gene_Name|Gene_ID|Feature_Type|Feature_ID|Transcript_BioType|Rank|HGVS.c|HGVS.p|cDNA.pos / cDNA.length|CDS.pos / CDS.length|AA.pos / AA.length|Distance|ERRORS / WARNINGS / INFO\'"

de.charite.compbio.jannovar.annotation.AnnotationException

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	2L

de.charite.compbio.jannovar.annotation.AnnotationLocation

Modifier and Type	Constant Field	Value
public static final int	INVALID_RANK	-1

de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription

Modifier and Type	Constant Field	Value
public static final int	INVALID_NT_COUNT	-1

de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant

Modifier and Type	Constant Field	Value
public static final int	NO_TRANSCRIPT_VERSION	-1

de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension

Modifier and Type	Constant Field	Value
public static final int	LEN_NO_TER	0

de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift

Modifier and Type	Constant Field	Value
public static final int	LEN_NO_TER	0
public static final int	LEN_SHORT	1

de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant

Modifier and Type	Constant Field	Value
public static final int	NO_PROTEIN_ISOFORM	-1

de.charite.compbio.jannovar.impl.parse.TranscriptParseException

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	2L

de.charite.compbio.jannovar.mendel.Genotype

Modifier and Type	Constant Field	Value
public static final int	NO_CALL	-1
public static final int	REF_CALL	0

de.charite.compbio.jannovar.pedigree.PedParseException

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	2L

de.charite.compbio.jannovar.reference.ProjectionException

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	1L

de.charite.compbio.jannovar.reference.TranscriptProjectionDecorator

Modifier and Type	Constant Field	Value
public static final int	INVALID_EXON_ID	-1
public static final int	INVALID_INTRON_ID	-1

de.charite.compbio.jannovar.reference.TranscriptSupportLevels

Modifier and Type	Constant Field	Value
public static final int	LONGEST_TRANSCRIPT	7
public static final int	LOW_PRIORITY	8
public static final int	NOT_AVAILABLE	-1
public static final int	TSL1	1
public static final int	TSL2	2
public static final int	TSL3	3
public static final int	TSL4	4
public static final int	TSL5	5
public static final int	UCSC_CANONICAL	6